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A Reply to Gina Rippon’s Commentary on Sex Based Differences in The Brain

By alcanthro Leave a Comment Sep 1 1

In Men and Women’s Brains Aren’t Really That Different, Gina Rippon provides an excerpt from her book on gender differences in the brain. Unfortunately, the piece reads more like an op-ed than a form of sci-com. It could be that in other areas of the book, there is substance which justifies her position, but there is absolutely nothing in the article which does so. There are also two issues that I have with the claim. The first issue is a semantic one. Scientists need to become better at differentiating sex and gender. The second issue is in actual substantiation and a contradiction between the science that does exist and her position.

The Semantic Issue

From a semantic perspective, it seems that Gina is referring to potential sex based differences in the brain, rather than gender based differences. I’ve written extensively on the concept of gender, both here on Medium and elsewhere. Gender is what I refer to as an eidos: a culturally defined role which is related to, but distinct from, underlying biological features. 

Sex is biological. Gender is cultural. While the two are related, they are not the same, and while I admit that I do sometimes use gender terms and sex terms in place of one another, I do try to make sure that I avoid this error, as all science communicators should. Indeed, science communicators are apt to point out the distinction between sex and gender, when there is pseudo-scientific or anti-scientific rhetoric used to attack transgender people and other groups, but we often fail to recognize the distinction between sex and gender, in our own work, thus clouding the issue and spreading the misunderstanding further.

The Science

The second issue is that science does not seem to justify her position. While it may be true that the science on sex based differences is not as robust as some might think, that’s not enough to argue that there is no inherent sex based difference in how the brain functions. There are a number of reasons to think that the brains of females would be, on average, different from the brains of males. These differences could take multiple forms. Gross size of regions of the brain are of little interest. On that matter, I agree with Gina. Functional differences are what matters. These differences can be permanent or transient. 

Impact of Hormones on Functional Connectivity

The greatest reason to think that such differences between sexes exists is that males and females have different levels and cycles of hormones, and hormones seem to impact brain function. For instance, according to Lu et al. 2019, changes in sex hormones during perimenopause apparently changes functional connectivity in the brain. Additionally, Hahn et al. 2016 noted that high doses of testosterone caused significant functional changes in adult brains in female-to-male transsexuals. This finding is inconsistent with the idea that sex dimorphisms are due to differences in enculturation and how the brain adapts to expectations. The adult brain of a male-to-female transsexual is unlikely to undergo such rapid and precise changes in expectation simply because they are starting transition. Given that hormones have such a large impact on functional connectivity, and there are significant differences in hormone levels between males and females, it becomes very difficult to argue that such differences are almost entirely due to conditioning.

For Gina’s position to be robust, she would have to respond to these issues. Either she would have to provide justification for the claim that hormones do not impact brain connectivity, or that somehow, even with this theory in place, it is conditioning, and not hormonal differences, that override and result in the dimorphism in brain function, and that without this conditioning, somehow the difference in hormones between males and females does not result in dimorphism. 

Fetal Research

But to further investigate the matter, it is important to conduct research on neurological distinctions that arise during fetal development. If sex based differences are due to later enculturation, they should be less likely to arise during fetal development. One such study is Sex differences in functional connectivity during fetal brain development, conducted by Wheelock et al. 2019. Gina actually provides criticism of this paper, and while there are some valid concerns, most of the criticism is not exactly valid. Of interest are the sample differences between the male and female participants, the testing of a large number of potential regions of interest, and the use of non-parametric tests due to a lack of apparent normality.

The sample sizes were unequal between male and female participants, and ages varied considerably, and during that time, cortical development varies considerably. If the age distribution of females was significantly different from the age distribution of males, in the study, the age difference could account for apparent sex based differences. However, the researchers specifically checked to see if there was a difference in gestational age at the time of the scan. The results of the test can be found in Table 1 — Demographic Information, and the results do not indicate a difference between the two populations.

Additionally, Gina mentioned that there are a lot of potential regions of interest. And on this matter, I agree. If a researcher performs enough hypothesis tests, there will be some that are successful. It’s a simple matter of chance. Therefore a followup study needs to be conducted to further justify that these regions of interest are not simply false positives, but actual differences in development.

Gina also commented on the use of parametric tests and their low statistical power. However, this argument really makes no sense. A hypothesis test is a statistical form of proof by contradiction. The null hypothesis is simply an initial assumption that is made, with the intent to try to find a result that contradicts it. The simpler the hypothesis — and non-parametric tests make fewer assumptions than parametric tests — the less likely the hypothesis is to be falsified.

In essence, this idea is the flip side to Occam’s razor: if a “simpler” explanation is more likely to be true, all else being equal, then it is less likely to be falsified. Therefore, it is more difficult to reject the null hypothesis. In the case of this study, the null hypothesis is equality, and so when using a non-parametric test, as is required because there wasn’t sufficient justification to assume normality, it would be more difficult for the researchers to conclude that the regions of interest are unequal.

Additionally, Gina mentioned that non-parametric tests cannot test for multivariate influences. While it is true that tests like the Spearman rank correlation is univariate, there are multivariate non-parametric tests available. Since Gina is concerned about the lack of attention to other variables, perhaps the solution is to see if the raw data is available and perform such a multivariate non-parametric test.

While there are some issues with a key study which indicates that sex based differences in the brain start to emerge in-utero, this kind of study does not exist in a vacuum. Alone, the study does not provide much justification. But given that we see various sex based differences, in fetal development, and in childhood, and in adolescence, across various cultures, the compass needle is pushed far away from the theory that the sexes are neurologically the same. It’s true that it would be more powerful, if it were repeated. If the same regions of interest were tested and similar results were found, then it would be justification that these hits were not just due to random chance.

Yes; more research should be done, as is generally the case in science. And perhaps it is reasonable to dismiss the claim that there are sex based differences in the brain. However, when it comes to claims that there is no difference, the claim is simply unjustified. Moreover, the compass needle does point away from that theory, especially when coupling the findings of fetal studies with studies that indicate that hormones have a significant impact on functional connectivity in the brain.

Plants vs Animals

By alcanthro Leave a Comment May 15 0

Vegans have an interesting view of the plant-animal divide. I don’t like it.

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Skeptical Tawny Frogmouth

By alcanthro Leave a Comment May 7 2

So, I found an interesting photo of a tawny frogmouth. Found in Australia, it’s a bird that looks a lot like an owl, but it’s not one. It’s just an example of parallel evolution. It looked perfect for a skeptical meme, but I felt like it was important to include the attribution, especially since it was under a license that required it. So here’s the info. Hopefully the QR code works. I’ll update this page accordingly.

Source: https://www.nationalparks.nsw.gov.au/plants-and-animals/tawny-frogmouth

License: CC-BY 4.0

Online Communities and Massive Multiplayer Online Games as Homes

By alcanthro Leave a Comment May 1 0

Most people think of homes as physical places. But a home can be a lot more than that. A home is every bit as much a product of who as it is where and what. Here are three definitions of “home” provided by Merriam-Webster:

  • one’s place of residence
  • the social unit formed by a family living together
  • a familiar or usual setting

Virtual communities, like those that form around massively multiplayer online games, are homes for many people. No, we don’t physically live in these virtual worlds, but many view those with whom they interact in these worlds to be family, and they are absolutely familiar and usual settings.

Online gaming communities are so interesting that there are entire anthropology papers which are dedicated to the topic. Back in 2014, Sonja Sapach wrote an interesting discussion on the challenges of doing ethnographic research in virtual worlds (Sapach 2014). Her research focused on sacred spaces within the virtual world. While there are plenty of sacred spaces that we might consider on a regular basis, such as churches, monuments to fallen military or those who died under terrible circumstances, such as the 9/11 memorial, it might come as a shock that we can look at sacred spaces in online communities, but it just shows how much of an impact these communities can have.

I’m a huge fan of MMOs, though I don’t play them that often. It was actually pretty late that I got into WoW at all, and even then it wasn’t official WoW, but rather a vanilla server that I frequented. Specifically, I spent a lot of time on Nostalrius Begins. WoW has gone through many iterations. Vanilla WoW is the original unaltered version of the game. And a lot of people were nostalgic for it. Blizzard didn’t support vanilla WoW, so Nostalrius came along and made things happen.

The server had a huge following. People spent a lot of time playing, and the server became a massive collection of communities. It became a home for many. A video of the final minutes of the server show just how much interest there was in the platform.

For many, Nostalrius was more than just a game. It was a place from memory. It was a place to which people wanted to return. It was a home. And I honestly don’t think that’s a problem. Sure, it can be an issue if people stop working and just spend all their time gaming, but then again, it’s a problem if someone just wants to stay at home rather than make a living too. We need to be productive in our lives. We can’t just spend our days at home. And even if we can redefine “work” and monetize gaming, we still have to do something.

The “addiction” that some people might experience with online gaming is very much an indication of how much of a home these communities can be. A home is a place of comfort. And when we’re comfortable, we don’t want to leave that comfort zone. Will Greenwald said it well, in his “Anatomy of MMO addiction.”

It’s easy to give up on single-player games after a while because you run out of things to do. Even in normal multiplayer games, you can turn them off after a while when everyone’s tired and doesn’t want to protect the base/capture the flag/kill each other anymore. A big enough MMO guild can ensure that there will always be a handful of friends online and ready to adventure with you, no matter what time it is. These friends make it all the more difficult to stop playing, whether it’s for the night to get some sleep, or forever because you don’t want to pay the monthly fee anymore.

Leaving an MMO is not leaving a game. It is leaving a community. It is every bit as much like moving away from home, separating oneself from friends and family. Even if it is often better for us to move on and make a new home for ourselves, it can be difficult, because it’s home. And that’s what these MMOs are.

Do you have an online community that you call home? Do you know someone who does?

Note: This article was written because of a short discussion that I had with Mathabatha Sexwale, in response to his discussion on creating a home. More and more I think that we will start to see these virtual worlds, regardless of whether they’re games or other virtual communities, as more than just a place to kill time, but rather a place to call home, a place where our friends are, a place where we feel safe and can express ourselves.

Revising Public Health Practice

By alcanthro Leave a Comment Apr 24 0

Vaccine Banner

Sanitation, vaccines, control of various environmental factors that affect health, and much more have greatly improved our quality of life and our average lifespan. But while public health practice has come a long way, there are still numerous areas of improvement. Not only must public health practice improve in terms of communication with the public, but we must also work on improving how quickly scientific knowledge is used to update public health practice. Additionally, public health policy involving zoonotic disease (diseases which are contracted from animals) and protection of the health of livestock and pets, also requires serious attention.

Pseudoscience

The antivax movement, the push for homeopathy, and great deal of other pseudoscientific movements are hurting public health practice. While there’s still lot that we do not know about recent outbreaks of various diseases such as measles and whooping cough, medical science absolutely justifies the use of vaccines in the prevention of dangerous symptoms associated with these diseases. Meanwhile, the link between vaccines and autism has long since been debunked, and yet a large portion of the population still believes in it.

Furthermore, a number of people are choosing to forgo “traditional” medicine and instead use homeopathic treatment. Unfortunately, based on systematic review of available literature, there is no indication that homeopathy works any better than a placebo. There is also no scientific justification for a mechanism through which it should work. Homeopathy literally has every trace of active ingredient diluted out of the product, to the point where a person is just consuming a sugar pill. While the placebo effect can be a powerful medicine in and of itself, it is not a substitute for recognized gold standards of care.

Better science communication, and better education in philosophy, both should improve individual understanding of how science works and acceptance of standard medical treatments. However, there are still other issues. There are cases where our standard of care is outdated.

Living Systematic Review

One of the greatest concerns with public health practice is that it takes a very long time for new scientific evidence to become part of the public health practice. One estimate places the lag time between findings and implementation at 17 years.

Unfortunately, in order to alter public health practice, we need to have more than just a single investigation indicating efficacy. Public health practice relies heavily on systematic reviews. There are two options for systematic reviews. A systematic review can periodically be conducted to see if there’s additional information available. This option is the traditional route. Alternatively, a systematic review can be ongoing, where data is added at regular intervals and the conclusion is reevaluated.

This process is called a living systematic review. This option is fairly new. As of 2017, protocols for the process were still being developed. Elliott JH et al. 2017 discusses the importance of living systematic reviews (LVRs), and suggests that they may be most useful when there’s a lot of new research being done on a topic, when there’s still a lot that we don’t know about the topic, and when new information might change current protocol.

Maintaining Trust

Unfortunately maintaining trust is going to be difficult even if we can update our protocols more quickly. Long standing recommendations being overturned can be problematic because people may wonder why it took so long for the medical community to realize their mistake. Meanwhile constantly changing recommendations to fit new data could establish a view that the medical community is fickle.

People may also become even more confused about what to do for proper health. While this issue isn’t as problematic for people who regularly see a doctor for checkups, some don’t, and current medical recommendations do not actually suggest that they are necessary. This lack of necessity is likely to change if public health policy is updated on a more regular basis though, so this factor needs to be taken into consideration.

Call to Research Format

Even with living systematic reviews, new research needs to be conducted and we need to communicate limitations of existing research. One of the issues that prevents public health policy, and science as a whole, from being as up to date as possible, and evolving at a fast enough pace, is a failure to communicate. I have written numerous papers on concerns about current medical science practices and limitations of our understanding. These papers are not research papers in the normal sense. They fellow what I call the “call to action format.”

Most of my focus has been on vaccines. I’ve written on the issue with understanding recent measles outbreaks, as well as our limited understanding of how asymptomatic infections influence Whooping Cough epidemics. While there is a lot that we know about vaccines and their efficacy, there seems to be a lot that we do not know. And these unknowns are not being discussed in enough detail or frequency to drive new research that can be used to fuel living systematic reviews.

The Format

The first half of the call to research format is similar to a systematic review, but it’s more focused. It looks for specific gaps in our understanding, and summarizes them. It might take into account personal observations by the author, as well as specific questions that they have come across. Questions may also be pulled from existing systematic reviews.

The second half of the paper is a discussion on potential theories on the matter, and studies that can be conducted. The discussion isn’t as detailed as a research proposal, but a single call to research paper could have many suggestions on types of research that can be performed. There should be at least enough detail that a person reading the paper could take the suggestion and turn it into a full research paper.


Zoological Public Health Policy

The second half of this discussion is going to focus on a different aspect of public health. A lot of Americans have pets. While these figures are old, at least as of 2006, approximately 60% of Americans had some kind of pet, according to Gallup. 44% of Americans specifically own a dog, and 29% own a cat. And almost 80% of pet owners have both a dog and a cat.

The lack of information on how many people even have pets is one example of how public health policy needs to be improve. But why is such information important? What do pets have to do with public health? We can look to an article by A. S. Deller, who wrote an interesting piece on zombies, but not quite the zombies of science fiction. Various pathogens alter the brain function of their hosts and actually create what might as well be considered zombies. One such pathogen is Toxoplasma gondii (toxoplasmosis or T. gondii). This pathogen does affect humans, but the way in which it impacts its human hosts is not well known.

According to the CDC, 11% of of the population, aged six and up, have experienced a T. gondii infection. The pathogen can be contracted from eating exposed food, but a major source of infection is zoonotic (animal) sources. While T. gondii doesn’t cause humans to become zombies and seek out cats, it does seem to have neurological effects. In humans, the pathogen seems to be associated with increased risk of psychological conditions such as schizophrenia.

The length in time that it’s taken to even realize the issue, and the lack of protocol developed to deal with it, goes back to the first half of this discussion. Public health policy isn’t being updated fast enough. But the problem also shows that we need to be hyperaware of potential threats from pets, as well as livestock.

There is work being conducted on creating a vaccine for T. gondii, but it’s far from complete. I think that there are two reasons why there is currently no vaccine. One is simply the difficulty in creating the vaccine. The other is in the failure to consider it a problem. Yes, T. gondii infects a lot of our pets, but the public health community never really considered that too much of an issue, because we didn’t consider the potential risk to humans.

But we also need to be more aware of the risks that diseases pose to our pets. We need to make sure that vaccine schedules are up to date, that they receive the right vaccines, enough vaccines, and not too much vaccines. We have a responsibility to protect our pets, because they did not choose to live with us. And therefore public health practice really should dedicate more of its attention to veterinary public health. There are programs available, including MPH-VPH programs, but the attention paid to zoonotic disease, especially risks to pets and risk from pets, simply isn’t enough.

The Absurd Opposition to Circumcision

By alcanthro Leave a Comment Mar 29 1

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Both the CDC and the WHO have produced recommendations for circumcision. While there isn’t enough information to create a full plan of action, recommending universal circumcision, the science is fairly solid when it comes to counting the claims of anti-circs. I use that term because in many cases, the kind of science denial seen among anti-cutters is no better than that seen among anti-vaxxers. And because of the degree of science denial, and other political issues, I’ve decided to finally write a public health article on the topic.

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The Miseuse of the word Myth

By alcanthro Leave a Comment Feb 20 0

I wasn’t going to write this article, but I suppose it fits this month’s theme on Medium: reasonable doubt. In common parlance, “myth” is used to mean something that is false or something that people believe without justification, like an urban legend. But for a mythicist and anthropologist, like myself, that’s simply not the case. The use of the word, in this sense is in many ways very similar to how certain people use the word “theory.”

So what is a myth? Let’s get a bit more basic. What is a narrative? Wikipedia’s explanation is pretty easy to understand.

A narrative or story is a report of connected events, real or imaginary, presented in a sequence of written or spoken words, or still or moving images, or both. The word derives from the Latin verb narrare, “to tell”, which is derived from the adjective gnarus, “knowing” or “skilled”.

On Myths

A myth is a type of narrative. But it’s more than just any story. It’s a story about ourselves. A myth is narrative, which is written with the intention of being truthful, which tries to establish our place in the world.

One can see now why history is a form of myth. It is written with the intention of being truthful, and its goal is to not only explain the past, but to connect the dots from the past to the present, explaining why things are the way that they are today.

History also has other components that other forms of myth don’t have. For one thing, a proper history should have a rough outline explaining how the information was transmitted from the observer to the historian, something I refer to as the genealogy of knowledge [1]. That’s one reason why the bible is myth, but not history.

I want to reiterate that a myth doesn’t have to be true or false. That’s not the point. History is overturned with new information all the time. What’s important is that it is written with the intention of being truthful.

Religion as Myth

One of the most frequent topics in which I hear the abuse of the word “myth” is in discussions on religion. Often it’s used to demean religion and religious people — “ah those people and their Bronze Age myths” — in a way which shows one’s own ignorance of the topic.

Religion does indeed have myths, or at least, that’s one of the cultural dimensions of religion described by Ninian Smart’s seven dimensions of religion. But pretty much every culture has some form of myth, because we all like to have an idea of where we’re from. It’s all a part of trying to find order in nature.

The Pseudoscience and Science of Astrology

By alcanthro Leave a Comment Feb 18 0

There might be something to astrology after all, but not in a mystical sense. I’ve been thinking about writing this article for a while, but I just wasn’t sure if anyone would be interested. Some people might even take it as a defense of astrology. I’m still not sure, but after reading Martin Rezny’s review of a season two episode of The Orville, I’ve decided to at least write a short version of it, though it does deserve being turned it into a full scholarly paper, and might do so one day.« Continue »

From Preprints to Omniprints

By alcanthro Leave a Comment Feb 17 0

Starting with ArXiv, the idea of preprints has been increasingly in popularity for some time. But now is the time for omniprints. Preprints were a good start. And Crossref has been indexing more and more preprints, with preprints outpacing journal articles by far (Crossref). There are a number of servers, including ArXiv and its derivatives, OSF’s preprint servers, ResearchGate, and more.

I rely exclusively on preprint servers for my publication, mostly out of spite for modern academia and its toxic nature. I absolutely refuse to pay a company so that they can profit off of my work. And honestly, if the goal of publishing is to communicate with other researchers, than traditional publications are not the answer, especially when they’re not open access.

But there’s an issue. A lot of people reject citation of preprints. They want to wait until there’s a “final” version. It’s not even that they’ll scrutinize it more heavily, but rather they will outright use the preprint nature of the paper to ignore it.

Of course, what matters isn’t whether a journal has decided to pick up an article — Wakefield taught us that—but rather what matters is that the content of the article is sound. And in order to determine whether that’s the case, a person has to read the article.

I do think that part of the problem is that the articles are called pre-prints. It’s right in the name: the article hasn’t been printed yet. It hasn’t been completed. That’s why we need to rename preprint servers, which have long since become far more than that, to something else. I’m not really sure what name we’ll end up using, but perhaps “omniprint” is the best option, as it implies “all prints” whether preprint or postprint, draft print, or final print.

Real Open Science

Related to omniprints is the idea of open access, where a journal lets anyone access the publication. I don’t see open access as real open science. It’s certainly a start. After all, if the goal of publishing is to communicate, we need to be able to read what’s being published! But it’s simply not enough. For one thing, publishing in open access journals is often very expensive, literally costing the author thousands of dollars! That’s why we need omniprint.

Actual Peer Review

Of course, in order to take full advantage of omniprint servers, they need to provide a number of tools to allow for an open peer review. Comment systems are useful, but they’re not a great way to quickly measure the quality of the paper. I think a tagging system might be useful, where people can anonymously tag a paper. Tags would probably have to include whether or not the paper is scholarly, if it justifies its position, if it needs improvement, and so on.

And that would be actual peer review. What we think of as peer review is really just one or two reviewers, who might be quite biased, along with an editor. How can we trust two or three people to make a decision about a paper, in an unbiased way? We can’t. That’s why we need omniprint.

Ramblings on a Paraconsistent Reality

By alcanthro Leave a Comment Feb 17 0

There are two camps of science: the provisional verification camp, which was really the first to arise, in a formal sense, when Francis Bacon formulated “the scientific method.” The second camp arose when philosophers such as Kant and Hume realized that there was an issue with induction. They questioned why repeated observations, consistent with a given explanation, really provided any justification for the theory. This concern led to Karl Popper creating a new view of science, as a system of falsification. And that’s where we’ll start this discussion.« Continue »

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  • A Reply to Gina Rippon’s Commentary on Sex Based Differences in The Brain
  • Plants vs Animals
  • Skeptical Tawny Frogmouth
  • Online Communities and Massive Multiplayer Online Games as Homes
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